J3_8V87_021
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8V87|1|2|U|60, 8V87|1|2|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V87_021 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0798
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
8V87|1|2|A|44
8V87|1|2|C|45
*
8V87|1|2|G|58
8V87|1|2|A|59
8V87|1|2|U|60
8V87|1|2|A|61
8V87|1|2|C|62
8V87|1|2|G|63
8V87|1|2|U|64
*
8V87|1|2|A|96
8V87|1|2|A|97
8V87|1|2|U|98
8V87|1|2|C|99
8V87|1|2|U|100
Current chains
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
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