J3_8V9J_013

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8V9J|1|a|U|853, 8V9J|1|a|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9J_013 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1373

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8V9J|1|a|C|806
8V9J|1|a|U|807
8V9J|1|a|A|808
8V9J|1|a|G|809
*
8V9J|1|a|C|839
8V9J|1|a|G|840
8V9J|1|a|U|841
8V9J|1|a|A|842
8V9J|1|a|G|843
*
8V9J|1|a|C|850
8V9J|1|a|A|851
8V9J|1|a|U|852
8V9J|1|a|U|853
8V9J|1|a|A|854
8V9J|1|a|A|855
8V9J|1|a|G|856

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain h

30S Ribosomal Protein S8