J3_8V9K_021

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9K_021 not in the Motif Atlas

Geometric match to J3_5TBW_002

Geometric discrepancy: 0.1046

The information below is about J3_5TBW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8V9K|1|A|G|27
8V9K|1|A|C|28
*
8V9K|1|A|G|562
8V9K|1|A|U|563
8V9K|1|A|G|564
8V9K|1|A|A|565
8V9K|1|A|A|566
8V9K|1|A|A|567
8V9K|1|A|A|568
8V9K|1|A|G|569
*
8V9K|1|A|C|596
8V9K|1|A|C|597

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20

Chain U

Large ribosomal subunit protein uL22

Chain W

50S ribosomal protein L24