J3_8V9K_026

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

8V9K|1|A|C|1460, 8V9K|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9K_026 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1671

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

8V9K|1|A|U|1459
8V9K|1|A|C|1460
8V9K|1|A|G|1461
8V9K|1|A|G|1462
8V9K|1|A|G|1463
8V9K|1|A|A|1464
8V9K|1|A|C|1465
*
8V9K|1|A|G|1496
8V9K|1|A|A|1497
8V9K|1|A|C|1498
8V9K|1|A|A|1499
8V9K|1|A|A|1500
*
8V9K|1|A|U|1517
8V9K|1|A|A|1518

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23