J3_8V9L_006

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8V9L|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9L_006 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.106

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8V9L|1|A|C|1421
8V9L|1|A|A|1422
8V9L|1|A|A|1423
8V9L|1|A|G|1424
*
8V9L|1|A|C|1823
8V9L|1|A|C|1824
8V9L|1|A|C|1825
8V9L|1|A|A|1826
8V9L|1|A|A|1827
8V9L|1|A|A|1828
8V9L|1|A|C|1829
*
8V9L|1|A|G|1838
8V9L|1|A|U|1839
8V9L|1|A|G|1840

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34