J3_8V9L_013

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAG*CGUAG*CAUUAAG

Length

16 nucleotides

Bulged bases

8V9L|1|a|U|853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8V9L_013 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1389

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8V9L|1|a|C|806
8V9L|1|a|U|807
8V9L|1|a|A|808
8V9L|1|a|G|809
*
8V9L|1|a|C|839
8V9L|1|a|G|840
8V9L|1|a|U|841
8V9L|1|a|A|842
8V9L|1|a|G|843
*
8V9L|1|a|C|850
8V9L|1|a|A|851
8V9L|1|a|U|852
8V9L|1|a|U|853
8V9L|1|a|A|854
8V9L|1|a|A|855
8V9L|1|a|G|856

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

30S Ribosomal Protein S2

Chain h

Small ribosomal subunit protein uS8