J3_8VFT_001

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8VFT|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VFT|1|5|C|112
8VFT|1|5|A|113
8VFT|1|5|G|114
8VFT|1|5|C|115
8VFT|1|5|G|116
*
8VFT|1|5|C|155
8VFT|1|5|G|156
8VFT|1|5|U|157
8VFT|1|5|A|158
8VFT|1|5|C|159
8VFT|1|5|G|160
*
8VFT|1|5|C|275
8VFT|1|5|C|276
8VFT|1|5|G|277
8VFT|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain L

eL13

Chain N

eL15

Chain h

uL29

Chain i

eL36