J3_8VFT_014
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8VFT|1|5|C|2470, 8VFT|1|5|A|2472, 8VFT|1|5|G|2475
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VFT_014 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5926
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8VFT|1|5|A|2451
8VFT|1|5|G|2452
8VFT|1|5|A|2453
8VFT|1|5|U|2454
8VFT|1|5|G|2455
8VFT|1|5|G|2456
*
8VFT|1|5|C|2465
8VFT|1|5|G|2466
8VFT|1|5|U|2467
8VFT|1|5|U|2468
8VFT|1|5|C|2469
8VFT|1|5|C|2470
8VFT|1|5|G|2471
8VFT|1|5|A|2472
8VFT|1|5|A|2473
8VFT|1|5|G|2474
8VFT|1|5|G|2475
8VFT|1|5|G|2476
*
8VFT|1|5|C|2501
8VFT|1|5|A|2502
8VFT|1|5|G|2503
8VFT|1|5|C|2504
8VFT|1|5|C|2505
8VFT|1|5|G|2506
8VFT|1|5|A|2507
8VFT|1|5|PSU|2508
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- eL15
- Chain X
- uL23
- Chain j
- eL37
Coloring options: