J3_8VFT_028

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8VFT|1|9|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_028 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1044

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VFT|1|9|A|40
8VFT|1|9|G|41
8VFT|1|9|A|42
8VFT|1|9|U|43
8VFT|1|9|U|44
8VFT|1|9|A|45
8VFT|1|9|A|46
8VFT|1|9|G|47
*
8VFT|1|9|C|479
8VFT|1|9|G|480
8VFT|1|9|C|481
8VFT|1|9|G|482
8VFT|1|9|C|483
8VFT|1|9|A2M|484
8VFT|1|9|A|485
8VFT|1|9|A|486
8VFT|1|9|U|487
*
8VFT|1|9|A|512
8VFT|1|9|G|513
8VFT|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain v

eEF2