J3_8VFT_034

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(B8Q)AG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_034 not in the Motif Atlas

Homologous match to J3_8P9A_076

Geometric discrepancy: 0.1266

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VFT|1|9|C|1218
8VFT|1|9|B8Q|1219
8VFT|1|9|A|1220
8VFT|1|9|G|1221
*
8VFT|1|9|C|1645
8VFT|1|9|C|1646
8VFT|1|9|A|1647
8VFT|1|9|G|1648
8VFT|1|9|U|1649
8VFT|1|9|A|1650
8VFT|1|9|A|1651
*
8VFT|1|9|U|1673
8VFT|1|9|G|1674
8VFT|1|9|A|1675
8VFT|1|9|U|1676
8VFT|1|9|U|1677
8VFT|1|9|A2M|1678
8VFT|1|9|A|1679
8VFT|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain cc

eS28