J3_8VFT_039

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_039 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1938

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8VFT|1|9|U|1350
8VFT|1|9|G|1351
*
8VFT|1|9|U|1360
8VFT|1|9|G|1361
8VFT|1|9|U|1362
8VFT|1|9|C|1363
*
8VFT|1|9|G|1375
8VFT|1|9|A|1376
8VFT|1|9|U|1377
8VFT|1|9|A|1378
8VFT|1|9|A|1379

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain CC

uS5

Chain RR

eS17