J3_8VFT_041

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

8VFT|1|9|U|1535, 8VFT|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VFT_041 not in the Motif Atlas

Homologous match to J3_8P9A_084

Geometric discrepancy: 0.2267

The information below is about J3_8P9A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VFT|1|9|C|1532
8VFT|1|9|A|1533
8VFT|1|9|C|1534
8VFT|1|9|U|1535
8VFT|1|9|G|1536
*
8VFT|1|9|C|1597
8VFT|1|9|G|1598
8VFT|1|9|U|1599
8VFT|1|9|G|1600
8VFT|1|9|A|1601
8VFT|1|9|U|1602
8VFT|1|9|G|1603
8VFT|1|9|G|1604
*
8VFT|1|9|C|1635
8VFT|1|9|G|1636
8VFT|1|9|A|1637
8VFT|1|9|G|1638

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25