J3_8VIO_022
3D structure
- PDB id
- 8VIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Mycobacterium smegmatis HflX bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8VIO|1|a|U|52, 8VIO|1|a|A|54, 8VIO|1|a|A|55
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VIO_022 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1093
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VIO|1|a|G|50
8VIO|1|a|C|51
8VIO|1|a|U|52
8VIO|1|a|U|53
8VIO|1|a|A|54
8VIO|1|a|A|55
8VIO|1|a|C|56
*
8VIO|1|a|G|359
8VIO|1|a|G|360
8VIO|1|a|G|361
8VIO|1|a|G|362
8VIO|1|a|A|363
8VIO|1|a|A|364
8VIO|1|a|U|365
8VIO|1|a|A|366
8VIO|1|a|U|367
*
8VIO|1|a|A|393
8VIO|1|a|G|394
8VIO|1|a|C|395
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain s
- 30S ribosomal protein S12
- Chain w
- 30S ribosomal protein S16
Coloring options: