J3_8VK7_012

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VK7|1|A|A|1827, 8VK7|1|A|A|1828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VK7_012 not in the Motif Atlas

Homologous match to J3_9DFE_011

Geometric discrepancy: 0.1442

The information below is about J3_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8VK7|1|A|C|1421
8VK7|1|A|A|1422
8VK7|1|A|A|1423
8VK7|1|A|G|1424
*
8VK7|1|A|C|1823
8VK7|1|A|C|1824
8VK7|1|A|C|1825
8VK7|1|A|A|1826
8VK7|1|A|A|1827
8VK7|1|A|A|1828
8VK7|1|A|C|1829
*
8VK7|1|A|G|1838
8VK7|1|A|U|1839
8VK7|1|A|G|1840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34