J3_8VKI_011

3D structure

PDB id

8VKI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

8VKI|1|A|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKI_011 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.106

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VKI|1|A|C|1413
8VKI|1|A|G|1414
8VKI|1|A|A|1415
8VKI|1|A|A|1416
8VKI|1|A|A|1417
8VKI|1|A|G|1418
*
8VKI|1|A|C|1843
8VKI|1|A|A|1844
8VKI|1|A|G|1845
*
8VKI|1|A|U|1857
8VKI|1|A|A|1858
8VKI|1|A|A|1859
8VKI|1|A|G|1860

Current chains

Chain A

23S ribosomal RNA

Nearby chains