J3_8VKV_007

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKV_007 not in the Motif Atlas

Geometric match to J3_4LFB_002

Geometric discrepancy: 0.0704

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8VKV|1|D|C|936
8VKV|1|D|A|937
8VKV|1|D|A|938
8VKV|1|D|G|939
*
8VKV|1|D|C|1344
8VKV|1|D|U|1345
8VKV|1|D|A|1346
8VKV|1|D|G|1347
8VKV|1|D|U|1348
8VKV|1|D|A|1349
8VKV|1|D|A|1350
*
8VKV|1|D|U|1372
8VKV|1|D|G|1373
8VKV|1|D|A|1374
8VKV|1|D|A|1375
8VKV|1|D|U|1376
8VKV|1|D|A|1377
8VKV|1|D|C|1378
8VKV|1|D|G|1379

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9