J3_8VKV_009
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8VKV|1|D|A|975, 8VKV|1|D|G|976, 8VKV|1|D|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKV_009 not in the Motif Atlas
- Geometric match to J3_4LFB_004
- Geometric discrepancy: 0.0795
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VKV|1|D|U|955
8VKV|1|D|U|956
8VKV|1|D|U|957
8VKV|1|D|A|958
8VKV|1|D|A|959
8VKV|1|D|U|960
8VKV|1|D|U|961
8VKV|1|D|C|962
*
8VKV|1|D|G|973
8VKV|1|D|A|974
8VKV|1|D|A|975
8VKV|1|D|G|976
8VKV|1|D|A|977
8VKV|1|D|A|978
8VKV|1|D|C|979
8VKV|1|D|C|980
8VKV|1|D|U|981
8VKV|1|D|U|982
8VKV|1|D|A|983
8VKV|1|D|C|984
*
8VKV|1|D|G|1221
8VKV|1|D|G|1222
8VKV|1|D|C|1223
8VKV|1|D|U|1224
8VKV|1|D|A|1225
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain O
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
- Chain W
- 30S ribosomal protein S19
- Chain X
- 30S ribosomal protein S13
Coloring options: