J3_8VKV_018
3D structure
- PDB id
- 8VKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8VKV|1|a|A|504, 8VKV|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VKV_018 not in the Motif Atlas
- Geometric match to J3_5J7L_066
- Geometric discrepancy: 0.055
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VKV|1|a|G|30
8VKV|1|a|C|31
*
8VKV|1|a|G|474
8VKV|1|a|C|475
8VKV|1|a|G|476
8VKV|1|a|A|477
8VKV|1|a|A|478
8VKV|1|a|A|479
8VKV|1|a|A|480
8VKV|1|a|G|481
8VKV|1|a|A|482
8VKV|1|a|A|483
8VKV|1|a|C|484
*
8VKV|1|a|G|496
8VKV|1|a|A|497
8VKV|1|a|G|498
8VKV|1|a|U|499
8VKV|1|a|G|500
8VKV|1|a|A|501
8VKV|1|a|A|502
8VKV|1|a|A|503
8VKV|1|a|A|504
8VKV|1|a|A|505
8VKV|1|a|G|506
8VKV|1|a|A|507
8VKV|1|a|A|508
8VKV|1|a|C|509
8VKV|1|a|C|510
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L22
- Chain 3
- 50S ribosomal protein L24
- Chain z
- 50S ribosomal protein L20
Coloring options: