J3_8VKW_012

3D structure

PDB id

8VKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to delNTE-HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.44 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VKW|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VKW_012 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1468

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8VKW|1|A|C|1421
8VKW|1|A|A|1422
8VKW|1|A|A|1423
8VKW|1|A|G|1424
*
8VKW|1|A|C|1823
8VKW|1|A|C|1824
8VKW|1|A|C|1825
8VKW|1|A|A|1826
8VKW|1|A|A|1827
8VKW|1|A|A|1828
8VKW|1|A|C|1829
*
8VKW|1|A|G|1838
8VKW|1|A|U|1839
8VKW|1|A|G|1840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34