J3_8VOO_002

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VOO|1|D|C|48, 8VOO|1|D|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_002 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.0631

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VOO|1|D|G|46
8VOO|1|D|C|47
8VOO|1|D|C|48
8VOO|1|D|U|49
8VOO|1|D|A|50
8VOO|1|D|A|51
8VOO|1|D|C|52
*
8VOO|1|D|G|359
8VOO|1|D|G|360
8VOO|1|D|G|361
8VOO|1|D|G|362
8VOO|1|D|A|363
8VOO|1|D|A|364
8VOO|1|D|U|365
8VOO|1|D|A|366
8VOO|1|D|U|367
*
8VOO|1|D|A|393
8VOO|1|D|G|394
8VOO|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

30S ribosomal protein S16