J3_8VOO_006

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VOO|1|D|U|871, 8VOO|1|D|A|873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_006 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.0739

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8VOO|1|D|C|826
8VOO|1|D|U|827
8VOO|1|D|U|828
8VOO|1|D|G|829
*
8VOO|1|D|C|857
8VOO|1|D|G|858
8VOO|1|D|G|859
8VOO|1|D|A|860
8VOO|1|D|G|861
*
8VOO|1|D|C|868
8VOO|1|D|G|869
8VOO|1|D|U|870
8VOO|1|D|U|871
8VOO|1|D|A|872
8VOO|1|D|A|873
8VOO|1|D|G|874

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S21

Chain G

30S ribosomal protein S2

Chain N

30S ribosomal protein S8