J3_8VOO_011

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VOO|1|D|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_011 not in the Motif Atlas

Geometric match to J3_8B0X_029

Geometric discrepancy: 0.086

The information below is about J3_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VOO|1|D|C|990
8VOO|1|D|U|991
8VOO|1|D|U|992
8VOO|1|D|G|993
8VOO|1|D|A|994
8VOO|1|D|C|995
8VOO|1|D|A|996
8VOO|1|D|U|997
*
8VOO|1|D|A|1044
8VOO|1|D|C|1045
8VOO|1|D|A|1046
8VOO|1|D|G|1047
*
8VOO|1|D|C|1210
8VOO|1|D|U|1211
8VOO|1|D|U|1212
8VOO|1|D|A|1213
8VOO|1|D|C|1214
8VOO|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14