J3_8VOO_025

3D structure

PDB id

8VOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8VOO|1|a|A|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOO_025 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.0651

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VOO|1|a|C|1298
8VOO|1|a|G|1299
8VOO|1|a|G|1300
8VOO|1|a|A|1301
8VOO|1|a|A|1302
8VOO|1|a|G|1303
*
8VOO|1|a|C|1625
8VOO|1|a|A|1626
8VOO|1|a|G|1627
*
8VOO|1|a|C|1639
8VOO|1|a|A|1640
8VOO|1|a|A|1641
8VOO|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains