J3_8VOP_005
3D structure
- PDB id
- 8VOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 8VOP|1|D|U|723
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VOP_005 not in the Motif Atlas
- Geometric match to J3_5J7L_003
- Geometric discrepancy: 0.054
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8VOP|1|D|U|672
8VOP|1|D|A|673
*
8VOP|1|D|U|717
8VOP|1|D|A|718
8VOP|1|D|C|719
8VOP|1|D|C|720
8VOP|1|D|G|721
8VOP|1|D|G|722
8VOP|1|D|U|723
8VOP|1|D|G|724
8VOP|1|D|G|725
*
8VOP|1|D|C|732
8VOP|1|D|G|733
8VOP|1|D|G|734
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S18
- Chain F
- 30S ribosomal protein S21
- Chain L
- 30S ribosomal protein S6
- Chain Q
- 30S ribosomal protein S11
- Chain T
- Small ribosomal subunit protein uS15
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