J3_8VOP_016

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

8VOP|1|D|U|1240, 8VOP|1|D|C|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOP_016 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1207

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VOP|1|D|C|1237
8VOP|1|D|A|1238
8VOP|1|D|A|1239
8VOP|1|D|U|1240
8VOP|1|D|G|1241
*
8VOP|1|D|C|1296
8VOP|1|D|G|1297
8VOP|1|D|U|1298
8VOP|1|D|A|1299
8VOP|1|D|G|1300
8VOP|1|D|U|1301
8VOP|1|D|C|1302
8VOP|1|D|C|1303
*
8VOP|1|D|G|1334
8VOP|1|D|U|1335
8VOP|1|D|C|1336
8VOP|1|D|G|1337

Current chains

Chain D

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S7

Chain X

30S ribosomal protein S13