J3_8VOQ_011

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VOQ|1|D|C|1214

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOQ_011 not in the Motif Atlas

Geometric match to J3_8B0X_029

Geometric discrepancy: 0.0849

The information below is about J3_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VOQ|1|D|C|990
8VOQ|1|D|U|991
8VOQ|1|D|U|992
8VOQ|1|D|G|993
8VOQ|1|D|A|994
8VOQ|1|D|C|995
8VOQ|1|D|A|996
8VOQ|1|D|U|997
*
8VOQ|1|D|A|1044
8VOQ|1|D|C|1045
8VOQ|1|D|A|1046
8VOQ|1|D|G|1047
*
8VOQ|1|D|C|1210
8VOQ|1|D|U|1211
8VOQ|1|D|U|1212
8VOQ|1|D|A|1213
8VOQ|1|D|C|1214
8VOQ|1|D|G|1215

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14