J3_8VOQ_028

3D structure

PDB id

8VOQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOQ_028 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.0554

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VOQ|1|a|G|1424
8VOQ|1|a|G|1425
8VOQ|1|a|G|1426
8VOQ|1|a|A|1427
8VOQ|1|a|C|1428
8VOQ|1|a|G|1429
*
8VOQ|1|a|C|1564
8VOQ|1|a|C|1565
*
8VOQ|1|a|G|1568
8VOQ|1|a|A|1569
8VOQ|1|a|A|1570
8VOQ|1|a|A|1571
8VOQ|1|a|A|1572
8VOQ|1|a|G|1573
8VOQ|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2