J3_8VOS_002

3D structure

PDB id

8VOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VOS|1|D|C|48, 8VOS|1|D|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VOS_002 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.0562

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VOS|1|D|G|46
8VOS|1|D|C|47
8VOS|1|D|C|48
8VOS|1|D|U|49
8VOS|1|D|A|50
8VOS|1|D|A|51
8VOS|1|D|C|52
*
8VOS|1|D|G|359
8VOS|1|D|G|360
8VOS|1|D|G|361
8VOS|1|D|G|362
8VOS|1|D|A|363
8VOS|1|D|A|364
8VOS|1|D|U|365
8VOS|1|D|A|366
8VOS|1|D|U|367
*
8VOS|1|D|A|393
8VOS|1|D|G|394
8VOS|1|D|C|395

Current chains

Chain D

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S12

Chain U

Small ribosomal subunit protein bS16