J3_8VR4_010

3D structure

PDB id

8VR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and erythromycin:50S-HflX-A-Ery

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAAG*CAG*UAAG

Length

13 nucleotides

Bulged bases

8VR4|1|A|A|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VR4_010 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.108

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VR4|1|A|C|1413
8VR4|1|A|G|1414
8VR4|1|A|A|1415
8VR4|1|A|A|1416
8VR4|1|A|A|1417
8VR4|1|A|G|1418
*
8VR4|1|A|C|1843
8VR4|1|A|A|1844
8VR4|1|A|G|1845
*
8VR4|1|A|U|1857
8VR4|1|A|A|1858
8VR4|1|A|A|1859
8VR4|1|A|G|1860

Current chains

Chain A

23S ribosomal RNA

Nearby chains