J3_8VS9_002

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_002 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1698

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8VS9|1|16S|C|936
8VS9|1|16S|A|937
8VS9|1|16S|A|938
8VS9|1|16S|G|939
*
8VS9|1|16S|C|1344
8VS9|1|16S|U|1345
8VS9|1|16S|A|1346
8VS9|1|16S|G|1347
8VS9|1|16S|U|1348
8VS9|1|16S|A|1349
8VS9|1|16S|A|1350
*
8VS9|1|16S|U|1372
8VS9|1|16S|G|1373
8VS9|1|16S|A|1374
8VS9|1|16S|A|1375
8VS9|1|16S|U|1376
8VS9|1|16S|A|1377
8VS9|1|16S|C|1378
8VS9|1|16S|G|1379

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain S07

30S ribosomal protein S7

Chain S09

Small ribosomal subunit protein uS9