J3_8VS9_013

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8VS9|1|23S|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_013 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1385

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8VS9|1|23S|C|1306
8VS9|1|23S|A|1307
8VS9|1|23S|A|1308
8VS9|1|23S|G|1309
*
8VS9|1|23S|C|1605
8VS9|1|23S|C|1606
8VS9|1|23S|C|1607
8VS9|1|23S|A|1608
8VS9|1|23S|A|1609
8VS9|1|23S|A|1610
8VS9|1|23S|C|1611
*
8VS9|1|23S|G|1620
8VS9|1|23S|U|1621
8VS9|1|23S|G|1622

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L34

50S ribosomal protein L34