J3_8VS9_014

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_014 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1039

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8VS9|1|23S|C|2091
8VS9|1|23S|U|2092
8VS9|1|23S|G|2093
*
8VS9|1|23S|C|2196
8VS9|1|23S|U|2197
8VS9|1|23S|A|2198
8VS9|1|23S|A|2199
8VS9|1|23S|C|2200
*
8VS9|1|23S|G|2223
8VS9|1|23S|G|2224
8VS9|1|23S|A|2225
8VS9|1|23S|C|2226
8VS9|1|23S|A|2227
8VS9|1|23S|G|2228

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2

Chain L09

Large ribosomal subunit protein bL9

Chain L28

50S ribosomal protein L28