J3_8VS9_017

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8VS9|1|23S|U|2833, 8VS9|1|23S|A|2835, 8VS9|1|23S|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_017 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.2406

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8VS9|1|23S|G|2812
8VS9|1|23S|A|2813
8VS9|1|23S|A|2814
8VS9|1|23S|C|2815
*
8VS9|1|23S|G|2831
8VS9|1|23S|U|2832
8VS9|1|23S|U|2833
8VS9|1|23S|G|2834
8VS9|1|23S|A|2835
8VS9|1|23S|U|2836
*
8VS9|1|23S|A|2882
8VS9|1|23S|A|2883
8VS9|1|23S|U|2884
8VS9|1|23S|G|2885
8VS9|1|23S|A|2886
8VS9|1|23S|A|2887
8VS9|1|23S|C|2888

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L17

Large ribosomal subunit protein bL17

Chain L22

50S ribosomal protein L22

Chain L32

50S ribosomal protein L32