J3_8VS9_019

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_019 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.2459

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8VS9|1|16S|G|46
8VS9|1|16S|C|47
*
8VS9|1|16S|G|361
8VS9|1|16S|G|362
8VS9|1|16S|A|363
8VS9|1|16S|A|364
8VS9|1|16S|U|365
8VS9|1|16S|A|366
8VS9|1|16S|U|367
*
8VS9|1|16S|A|393
8VS9|1|16S|G|394
8VS9|1|16S|C|395

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S12

30S ribosomal protein S12

Chain S16

30S ribosomal protein S16