J3_8VS9_029

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8VS9|1|23S|A|504, 8VS9|1|23S|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_029 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1221

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8VS9|1|23S|G|30
8VS9|1|23S|C|31
*
8VS9|1|23S|G|474
8VS9|1|23S|C|475
8VS9|1|23S|G|476
8VS9|1|23S|A|477
8VS9|1|23S|A|478
8VS9|1|23S|A|479
8VS9|1|23S|A|480
8VS9|1|23S|G|481
8VS9|1|23S|A|482
8VS9|1|23S|A|483
8VS9|1|23S|C|484
*
8VS9|1|23S|G|496
8VS9|1|23S|A|497
8VS9|1|23S|G|498
8VS9|1|23S|U|499
8VS9|1|23S|G|500
8VS9|1|23S|A|501
8VS9|1|23S|A|502
8VS9|1|23S|A|503
8VS9|1|23S|A|504
8VS9|1|23S|A|505
8VS9|1|23S|G|506
8VS9|1|23S|A|507
8VS9|1|23S|A|508
8VS9|1|23S|C|509
8VS9|1|23S|C|510

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L20

50S ribosomal protein L20

Chain L22

50S ribosomal protein L22

Chain L24

50S ribosomal protein L24