J3_8VS9_035

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VS9_035 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.2265

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8VS9|1|23S|G|1424
8VS9|1|23S|G|1425
8VS9|1|23S|G|1426
8VS9|1|23S|A|1427
8VS9|1|23S|C|1428
8VS9|1|23S|G|1429
*
8VS9|1|23S|C|1564
8VS9|1|23S|C|1565
*
8VS9|1|23S|G|1568
8VS9|1|23S|A|1569
8VS9|1|23S|A|1570
8VS9|1|23S|A|1571
8VS9|1|23S|A|1572
8VS9|1|23S|G|1573
8VS9|1|23S|C|1574

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2