J3_8VSA_031

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8VSA|1|23S|A|504, 8VSA|1|23S|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VSA_031 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1256

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8VSA|1|23S|G|30
8VSA|1|23S|C|31
*
8VSA|1|23S|G|474
8VSA|1|23S|C|475
8VSA|1|23S|G|476
8VSA|1|23S|A|477
8VSA|1|23S|A|478
8VSA|1|23S|A|479
8VSA|1|23S|A|480
8VSA|1|23S|G|481
8VSA|1|23S|A|482
8VSA|1|23S|A|483
8VSA|1|23S|C|484
*
8VSA|1|23S|G|496
8VSA|1|23S|A|497
8VSA|1|23S|G|498
8VSA|1|23S|U|499
8VSA|1|23S|G|500
8VSA|1|23S|A|501
8VSA|1|23S|A|502
8VSA|1|23S|A|503
8VSA|1|23S|A|504
8VSA|1|23S|A|505
8VSA|1|23S|G|506
8VSA|1|23S|A|507
8VSA|1|23S|A|508
8VSA|1|23S|C|509
8VSA|1|23S|C|510

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L20

50S ribosomal protein L20

Chain L22

50S ribosomal protein L22

Chain L24

50S ribosomal protein L24