J3_8VTU_037

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8VTU|1|1A|U|504, 8VTU|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_037 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0458

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8VTU|1|1A|G|30
8VTU|1|1A|C|31
*
8VTU|1|1A|G|474
8VTU|1|1A|U|475
8VTU|1|1A|G|476
8VTU|1|1A|A|477
8VTU|1|1A|A|478
8VTU|1|1A|A|479
8VTU|1|1A|A|480
8VTU|1|1A|G|481
8VTU|1|1A|A|482
8VTU|1|1A|A|483
8VTU|1|1A|C|484
*
8VTU|1|1A|G|496
8VTU|1|1A|A|497
8VTU|1|1A|G|498
8VTU|1|1A|U|499
8VTU|1|1A|G|500
8VTU|1|1A|A|501
8VTU|1|1A|A|502
8VTU|1|1A|A|503
8VTU|1|1A|U|504
8VTU|1|1A|A|505
8VTU|1|1A|G|506
8VTU|1|1A|A|507
8VTU|1|1A|G|508
8VTU|1|1A|C|509
8VTU|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24