J3_8VTU_052

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VTU|1|1a|U|1212, 8VTU|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTU_052 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.148

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VTU|1|1a|C|990
8VTU|1|1a|U|991
8VTU|1|1a|U|992
8VTU|1|1a|G|993
8VTU|1|1a|A|994
8VTU|1|1a|C|995
8VTU|1|1a|A|996
8VTU|1|1a|U|997
*
8VTU|1|1a|A|1044
8VTU|1|1a|C|1045
8VTU|1|1a|A|1046
8VTU|1|1a|G|1047
*
8VTU|1|1a|C|1210
8VTU|1|1a|U|1211
8VTU|1|1a|U|1212
8VTU|1|1a|A|1213
8VTU|1|1a|C|1214
8VTU|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z