J3_8VTV_027

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VTV|1|2a|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_027 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0679

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8VTV|1|2a|C|826
8VTV|1|2a|U|827
8VTV|1|2a|A|828
8VTV|1|2a|G|829
*
8VTV|1|2a|C|857
8VTV|1|2a|G|858
8VTV|1|2a|A|859
8VTV|1|2a|A|860
8VTV|1|2a|G|861
*
8VTV|1|2a|C|868
8VTV|1|2a|G|869
8VTV|1|2a|U|870
8VTV|1|2a|U|871
8VTV|1|2a|A|872
8VTV|1|2a|A|873
8VTV|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8