J3_8VTV_052

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VTV|1|1a|U|1212, 8VTV|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTV_052 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1452

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VTV|1|1a|C|990
8VTV|1|1a|U|991
8VTV|1|1a|U|992
8VTV|1|1a|G|993
8VTV|1|1a|A|994
8VTV|1|1a|C|995
8VTV|1|1a|A|996
8VTV|1|1a|U|997
*
8VTV|1|1a|A|1044
8VTV|1|1a|C|1045
8VTV|1|1a|A|1046
8VTV|1|1a|G|1047
*
8VTV|1|1a|C|1210
8VTV|1|1a|U|1211
8VTV|1|1a|U|1212
8VTV|1|1a|A|1213
8VTV|1|1a|C|1214
8VTV|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z