J3_8VTW_056

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8VTW|1|2A|U|504, 8VTW|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0508

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|G|30
8VTW|1|2A|C|31
*
8VTW|1|2A|G|474
8VTW|1|2A|U|475
8VTW|1|2A|G|476
8VTW|1|2A|A|477
8VTW|1|2A|A|478
8VTW|1|2A|A|479
8VTW|1|2A|A|480
8VTW|1|2A|G|481
8VTW|1|2A|A|482
8VTW|1|2A|A|483
8VTW|1|2A|C|484
*
8VTW|1|2A|G|496
8VTW|1|2A|A|497
8VTW|1|2A|G|498
8VTW|1|2A|U|499
8VTW|1|2A|G|500
8VTW|1|2A|A|501
8VTW|1|2A|A|502
8VTW|1|2A|A|503
8VTW|1|2A|U|504
8VTW|1|2A|A|505
8VTW|1|2A|G|506
8VTW|1|2A|A|507
8VTW|1|2A|G|508
8VTW|1|2A|C|509
8VTW|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24