J3_8VTW_072

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VTW|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTW_072 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1379

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VTW|1|2a|C|990
8VTW|1|2a|U|991
8VTW|1|2a|U|992
8VTW|1|2a|G|993
8VTW|1|2a|A|994
8VTW|1|2a|C|995
8VTW|1|2a|A|996
8VTW|1|2a|U|997
*
8VTW|1|2a|A|1044
8VTW|1|2a|C|1045
8VTW|1|2a|A|1046
8VTW|1|2a|G|1047
*
8VTW|1|2a|C|1210
8VTW|1|2a|U|1211
8VTW|1|2a|U|1212
8VTW|1|2a|A|1213
8VTW|1|2a|C|1214
8VTW|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z