J3_8VTX_071

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VTX|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTX_071 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1441

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VTX|1|2a|C|990
8VTX|1|2a|U|991
8VTX|1|2a|U|992
8VTX|1|2a|G|993
8VTX|1|2a|A|994
8VTX|1|2a|C|995
8VTX|1|2a|A|996
8VTX|1|2a|U|997
*
8VTX|1|2a|A|1044
8VTX|1|2a|C|1045
8VTX|1|2a|A|1046
8VTX|1|2a|G|1047
*
8VTX|1|2a|C|1210
8VTX|1|2a|U|1211
8VTX|1|2a|U|1212
8VTX|1|2a|A|1213
8VTX|1|2a|C|1214
8VTX|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z