J3_8VTY_070

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VTY|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VTY_070 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.142

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VTY|1|2a|C|990
8VTY|1|2a|U|991
8VTY|1|2a|U|992
8VTY|1|2a|G|993
8VTY|1|2a|A|994
8VTY|1|2a|C|995
8VTY|1|2a|A|996
8VTY|1|2a|U|997
*
8VTY|1|2a|A|1044
8VTY|1|2a|C|1045
8VTY|1|2a|A|1046
8VTY|1|2a|G|1047
*
8VTY|1|2a|C|1210
8VTY|1|2a|U|1211
8VTY|1|2a|U|1212
8VTY|1|2a|A|1213
8VTY|1|2a|C|1214
8VTY|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z