J3_8VUP_008

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8VUP|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VUP_008 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.1531

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VUP|1|1|C|1298
8VUP|1|1|G|1299
8VUP|1|1|G|1300
8VUP|1|1|A|1301
8VUP|1|1|A|1302
8VUP|1|1|G|1303
*
8VUP|1|1|C|1625
8VUP|1|1|A|1626
8VUP|1|1|G|1627
*
8VUP|1|1|C|1639
8VUP|1|1|A|1640
8VUP|1|1|A|1641
8VUP|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains