J3_8VUP_018

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VUP|1|2|A|50, 8VUP|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VUP_018 not in the Motif Atlas

Geometric match to J3_4LFB_014

Geometric discrepancy: 0.2439

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VUP|1|2|G|46
8VUP|1|2|C|47
8VUP|1|2|C|48
8VUP|1|2|U|49
8VUP|1|2|A|50
8VUP|1|2|A|51
8VUP|1|2|C|52
*
8VUP|1|2|G|359
8VUP|1|2|G|360
8VUP|1|2|G|361
8VUP|1|2|G|362
8VUP|1|2|A|363
8VUP|1|2|A|364
8VUP|1|2|U|365
8VUP|1|2|A|366
8VUP|1|2|U|367
*
8VUP|1|2|A|393
8VUP|1|2|G|394
8VUP|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain u

30S ribosomal protein S16