J3_8VV4_008

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8VV4|1|1|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VV4_008 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.0834

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VV4|1|1|C|1298
8VV4|1|1|G|1299
8VV4|1|1|G|1300
8VV4|1|1|A|1301
8VV4|1|1|A|1302
8VV4|1|1|G|1303
*
8VV4|1|1|C|1625
8VV4|1|1|A|1626
8VV4|1|1|G|1627
*
8VV4|1|1|C|1639
8VV4|1|1|A|1640
8VV4|1|1|A|1641
8VV4|1|1|G|1642

Current chains

Chain 1

23S ribosomal RNA

Nearby chains