J3_8VV4_022

3D structure

PDB id

8VV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8VV4|1|2|U|871, 8VV4|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VV4_022 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.1319

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8VV4|1|2|C|826
8VV4|1|2|U|827
8VV4|1|2|U|828
8VV4|1|2|G|829
*
8VV4|1|2|C|857
8VV4|1|2|G|858
8VV4|1|2|G|859
8VV4|1|2|A|860
8VV4|1|2|G|861
*
8VV4|1|2|C|868
8VV4|1|2|G|869
8VV4|1|2|U|870
8VV4|1|2|U|871
8VV4|1|2|A|872
8VV4|1|2|A|873
8VV4|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21