J3_8VVP_007
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8VVP|1|WA|A|1536, 8VVP|1|WA|G|1643, 8VVP|1|WA|A|1644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_007 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.0561
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VVP|1|WA|U|1533
8VVP|1|WA|G|1534
8VVP|1|WA|A|1535
8VVP|1|WA|A|1536
8VVP|1|WA|C|1537
8VVP|1|WA|U|1538
8VVP|1|WA|A|1539
*
8VVP|1|WA|U|1624
8VVP|1|WA|A|1625
8VVP|1|WA|G|1626
*
8VVP|1|WA|C|1642
8VVP|1|WA|G|1643
8VVP|1|WA|A|1644
8VVP|1|WA|A|1645
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL3
- Chain IA
- L37
- Chain KA
- eL39
- Chain M
- L15
Coloring options: